@conference {BT304, title = {BT304: BioCconvert: A Conversion Tool Between BioC and PubAnnotation}, booktitle = {International Conference on Biomedical Ontology and BioCreative (ICBO BioCreative 2016)}, series = {Proceedings of the Joint International Conference on Biological Ontology and BioCreative (2016)}, year = {2016}, month = {11/30/16}, publisher = {CEUR-ws.org Volume 1747}, organization = {CEUR-ws.org Volume 1747}, abstract = {

BioC is a simple XML data format for text, annotations, and relations. PubAnnotation is a repository of text annotations focused on the life science literature. A conversion tool between BioC XML and the JSON import / export format of PubAnnotation has been developed, BioCconvert. As a demonstration, the Ab3P gold standard abbreviation annotations are being made available through PubAnnotation.

}, url = {http://ceur-ws.org/Vol-1747/BT304_ICBO2016.pdf}, author = {Donald C. Comeau and Rezarta Islamaj Do{\u g}an and Sun Kim and Chih-Hsuan Wei and W. John Wilbur and Zhiyong Lu} } @conference {BIT101, title = {BIT101-D204: Large-scale Semantic Indexing with Biomedical Ontologies}, booktitle = {International Conference on Biomedical Ontology and BioCreative (ICBO BioCreative 2016)}, series = {Proceedings of the Joint International Conference on Biological Ontology and BioCreative (2016)}, year = {2016}, month = {11/30/16}, publisher = {CEUR-ws.org Volume 1747}, organization = {CEUR-ws.org Volume 1747}, abstract = {

We introduce PubTator, a web-based application that enables large-scale semantic indexing and automatic concept recognition in biomedical ontologies. Not only was PubTator formally evaluated and top-rated in BioCreative, it also has been widely adopted and used by the scientific community from around the world, supporting both research projects and real-world applications in biocuration, crowdsourcing and translational bioinformatics.

}, url = {http://ceur-ws.org/Vol-1747/BIT101-D204_ICBO2016.pdf}, author = {Chih-Hsuan Wei and Robert Leaman and Zhiyong Lu} }