D106-BP04: Enhancing Information Accessibility of Publications with Text Mining and Ontology

TitleD106-BP04: Enhancing Information Accessibility of Publications with Text Mining and Ontology
Publication TypeConference Paper
Year of Publication2016
AuthorsXu W, Gupta A, Jaiswal P, Taylor C, Lockhart P
Conference NameInternational Conference on Biomedical Ontology and BioCreative (ICBO BioCreative 2016)
Date Published11/30/16
PublisherCEUR-ws.org Volume 1747
Other NumbersVol-1747|urn:nbn:de:0074-1747-1
Abstract

We present an ongoing effort on utilizing text mining methods and existing biological ontologies to help readers to access the information contained in the scientific articles. Our approach includes using multiple strategies for biological entity detection and using association analysis on extracted analysis. The entity extraction processes utilizes regular expression rules, ontologies, and keyword dictionary to get a comprehensive list of biological entities. In addition to extract list of entities, we also apply natural language processing and association analysis techniques to generate inferences among entities and comparing to known relations documented in the existing ontologies.

URLhttp://ceur-ws.org/Vol-1747/D106-BP04_ICBO2016.pdf