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Publications and Presentations

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Conference Paper
R. L. Walls, Mapping of glossary terms from the Flora of North America to the Plant Ontology enhances both resources, in 3rd International Conference on Biomedical Ontology (ICBO 2012), Graz, Austria, 2012.
J. Preece, Planteome Annotation Wiki: A Semantic Application for the Community Curation of Plant Genotypes and Phenotypes, in SWAT4LS 2011, London, UK, 2011, pp. 96-97.
J. Preece, Planteome Annotation Wiki: A Semantic Web Application for the Community Curation of Plant Genotypes and Phenotype., in 4th International Workshop on Semantic Web Applications and Tools for Life Sciences, Univ. of London and the Wellcome Trust Collection Conference Center (London, UK), 2011.
J. Preece, A Semantic Wiki for Genotype/Phenotype Annotation in Plant Species, in NETTAB 2010 conference on Biological Wikis, Naples, Italy, 2010, pp. 109-112.
E. Arnaud, Cooper, L., Shrestha, R., Menda, N., Nelson, R. T., Matteis, L., Skofic, M., Bastow, R., Jaiswal, P., Mueller, L., and McLaren, G., Towards a Reference Plant Trait Ontology for Modeling Knowledge of Plant Traits and Phenotype, in International Conference on Knowledge Discovery and Information Retrieval (IC3K2012), Barcelona, Spain, 2012.
Conference Presentation
L. D. Cooper, Annotating Gene Expression in Physcomitrella patens using the Plant Ontology: Facilitating Cross-Taxa Comparisons, Plant and Animal Genome XX Conference. San Diego, CA, 2012.
P. Jaiswal, Annotating the Maize B73 Gene Expression Atlas in the Plant Ontology- A Tool for Plant Genomics., 54th Annual Maize Genetics Conference. Portland, OR, 2012.
L. Cooper, Common Reference Ontologies for Plant Biology (cROP): A Platform for Integrative Plant Genomics, Plant and Animal Genome XXII Meeting. San Diego, CA, 2014.
L. D. Cooper, Expanding the Plant Ontology: Linking Plant Anatomy and Development to Genomics Across Plant Taxa, Plant and Animal Genome XX Conference. San Diego, CA, 2012.
P. Jaiswal, Plant Environmental Condition Ontology (EO), Fourth Annual Summit of the Phenotype Ontology Research Coordination Network. Phenotype Research Coordination Network, Biosphere2, Tucson, AZ, 2014.
J. L. Elser, Plant Ontology: Databases And Applications, Plant & Animal Genomes XVIII Conference. San Diego, CA, 2010.
L. D. Cooper, The Plant Ontology: Linking Genomic and Phenomic Data Across Plant Taxa, Plant and Animal Genome XX Conference. San Diego, CA, 2012.
P. Jaiswal, A Resource for a Common Reference Ontology for Plants, Plant and Animal Genome XXI Meeting. San Diego, CA, 2013.
E. Arnaud, The Species-Specific Crop Ontology (Generation Challenge Programme): Application and Integration into the Reference Plant Trait Ontology to Enable Data Mining on Phenotypes, Plant and Animal Genome XXI Conference. San Diego, CA, 2013.
R. L. Walls, Using the Plant Ontology to improve the interoperability of genomic and phenomic data sets, Plant Genomes & Biotechnology: from Genes to Networks. Cold Spring Harbor Laboratory, New York, 2011.
R. L. Walls, Using the Plant Ontology to Link Anatomical Structures to Gene Annotations in Physcomitrella patens, Moss 2011. Black Forest, Germany, 2011.
Journal Article
F. Lens, Cooper, L., Gandolfo, M. A., Groover, P., Jaiswal, P., Lachenbruch, R., Spicer, R., Staton, D., Stevenson, D. W., Walls, R. L., and Wegrzyn, J., An extension of the Plant Ontology project supporting wood anatomy and development research, IAWA Journal, vol. 33, pp. 113-117, 2012.
A. R. Deans, Lewis, S. E., Huala, E., Anzaldo, S. S., Ashburner, M., Balhoff, J. P., Blackburn, D. C., Blake, J. A., Burleigh, G. J., Chanet, B., Cooper, L. D., Courtot, M., Csösz, S., Cui, H., Dahdul, W., Das, S., Dececchi, A. T., Dettai, A., Diogo, R., Druzinsky, R. E., Dumontier, M., Franz, N. M., Friedrich, F., Gkoutos, G. V., Haendel, M., Harmon, L. J., Hayamizu, T. F., He, Y., Hines, H. M., Ibrahim, N., Jackson, L. M., Jaiswal, P., James-Zorn, C., Köhler, S., Lecointre, G., Lapp, H., Lawrence, C. J., Le Novère, N., Lundberg, J. G., Macklin, J., Mast, A. R., Midford, P. E., Mikó, I., Mungall, C. J., Oellrich, A., Osumi-Sutherland, D., Parkinson, H., Ramírez, M. J., Richter, S., Robinson, P. N., Ruttenberg, A., Schulz, K. S., Segerdell, E., Seltmann, K. C., Sharkey, M. J., Smith, A. D., Smith, B., Specht, C. D., Squires, B. R., Thacker, R. W., Thessen, A., Fernandez-Triana, J., Vihinen, M., Vize, P. D., Vogt, L., Wall, C. E., Walls, R. L., Westerfeld, M., Wharton, R. A., Wirkner, C. S., Woolley, J. B., Yoder, M. J., Zorn, A. M., and Mabee, P., Finding Our Way through Phenotypes, PLoS Biol, vol. 13, p. e1002033, 2015.