Day-4/Thursday program details

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Day-4 Program Details (View at a glance)

Thursday, August 4, 2016

Check early start
Cascade Ballroom 110ABC
ICBO Plenary Session #6

Title: Semantics and interoperability

Chairs: John Gennari and Melissa Haendel

8:30am-8:50am IT601Identifying Missing Hierarchical Relations in SNOMED CT from Logical Definitions Based on the Lexical Features of Concept Names (Olivier Bodenreider)
8:50am-9:10am IT602: A Semantic Web Representation of Entire Populations (William Hogan for Daniel Welch)
9:10am-9:30am IT603Improving the Semantics of Drug Prescriptions with a Realist Ontology (Adrien Barton)
9:30am-9:50am IT604: Qualitative causal analyses of biosimulation models (Neal Maxwell)
9:50am-10:10am IT605SEPIO: A Semantic Model for the Integration and Analysis of Scientific Evidence (Matthew Brush) 
10:10am-10:30am IT606: Measuring the importance of annotation granularity to the detection of semantic similarity between phenotype profiles (Prashanti Manda)
Coffee Break
Cascade Ballroom 110ABC
ICBO Plenary Session #7

Title: Data annotation, standards and computational reasoning

Chairs: Chris Stoeckert and Mathias Brochhausen

10:45am-11:05am IT701: A Quality-Assurance Study of ChEBI (Michael Halper)
11:05am-11:25am IT702: To MIREOT or not to MIREOT? A case study of the impact of using MIREOT in the Experimental Factor Ontology (EFO)  (Luke Slater)
11:25am-11:38am IT703: Semantic Digitization of Experimental Data in Biological Sciences (Saurabh Raghuvanshi)
11:38am-11:51am IT704: Representation of parts within the Foundational Model of Anatomy ontology (Melissa Clarkson)
11:51am-12:04pm IT705: A Realist Representation of Social Identity Data (Amanda Hicks)
12:04pm-12:30pm Open discussion
Cascade Ballroom 110ABC
Lunch (Also remove all Posters)
Cascade Ballroom 110ABC
ICBO Workshop W10 (more info)

An introduction to the Evidence and Conclusion Ontology and representing evidence in scientific research

Organizer: Marcus Chibucos

Elle Room 111A
ICBO Workshop W11 (more info)

Development of a Global Food Ontology (Farm to Fork)

Organizer: William Hsiao

1:30pm-1:40pm W11-01: Why we Need Food Ontology? (Damion Dooley)
1:40pm-1:50pm W11-02: International Efforts in Creating Food Vocabularies (Robert Hoehndorf and Matthew Lange)
1:50pm-2:00pm W11-03: Sustainable food systems and food in ecosystems (Pier Luigi Buttigieg)
2:00pm-2:10pm W11-04: Food composition: Understanding what gives food its colour, taste and aroma (Miguel Angel Rodriguez Garcia)
2:10pm-2:20pm W11-05: Food safety and infectious disease (William Hsiao)
2:20pm-2:30pm W11-06: FoodON Use cases: Caution! Food Allergies Ahead (Emma Griffiths)
2:30pm-2:40pm W11-07: IC3-Foods: An infrastructure for the next generation internet of food systems, food, and health. (Matthew Lange)
2:40pm-3:00pm W11-08: Use cases from participants (Audience)
3:00pm-4:00pm Discussion
Burlingham Room 111B

ICBO Workshop W12 (more info)

Tools and Applications for Data Standards and Knowledge Sharing in Plant Biodiversity

Organizers: Laurel Cooper, Dennis Stevenson, Chelsea Specht

1:40pm-2:00pm W12-01: Some Challenges in Working with Biodiversity Ontologies (Joel Sachs, Hong Cui and James Macklin: Remote presentation (Joel Sachs)
2:00pm-2:20pm W12-02: TraitBank: semantic integration of biodiversity data from diverse sources (Katja Schulz)
2:20pm-2:40pm W12-03: The Biological Collection Ontology links traditional and genomic biodiversity data for plants or any organism (Ramona Walls)
2:40pm-3:00pm W12-04: The Plant Phenology Ontology for Phenological Data Integration (Brian Stucky)
3:00pm-3:20pm Coffee Break
3:20pm-3:40pm D103-W12-05-IP36: The Phenoscape Knowledgebase: tools and APIs for computing across phenotypes from evolutionary diversity and model organisms (James Balhoff)
3:40pm-4:00pm W12-06:  Evolution of Floral Form: The potential of ontologies across diverse plant lineages (Chelsea Specht)
4:00pm-4:30pm Discussion

Trysting Tree Room 114AB

ICBO Workshop W13 (more info)

Semantic Metadata with ISO 11179 Metadata Registry Standard

Organizers: Denise Warzel and Robinette Renner

1:30pm-2:30pm Data management and data element metadata in 11179
  Lesson 1: Data Management
  Lesson 2: ISO/IEC 11179 Fundamentals
  Lesson 3: Forming Data Elements in 11179
2:30pm-2:45pm Exercise
3:00pm-3:15pm Review/Issues/Coffee
3:15pm-3:30pm Using NCI tools to define semantics and syntax of Data Elements
  Lesson 4: Introduction to Curation Tool - Exercise
3:30pm-4:00pm Hands on Walk Through Exercise Group
  Creating and Classifying Collections of CDEs
  NCI Form Builder

Boardroom (upstairs)

ICBO Workshop W14 (more info)

Fourth International Workshop on Definitions in Ontologies (IWOOD 2016)

Organizers: Selja Seppälä and Daniel Schlegel

1:30pm-2:00pm W14-01: Uncovering Definition Coverage in the OBO Foundry Ontologies (Daniel Schlegel)
2:00pm-2:30pm W14-02: Systematizing Definitions in Ontologies (Selja Seppälä)
2:30pm-2:45pm Coffee Break
2:45pm-3:00pm Issues in definitions
3:00pm-3:30pm Exercises
3:30pm-4:00pm Discussion


Coffee Break (workshop organizers to decide timing)


Activities on your own

  • Enjoy the City and outskirts
  • Visit places (consult locals or city guide and maps found in your conference bag)
  • Dinner (on your own)