Error message

  • Deprecated function: The each() function is deprecated. This message will be suppressed on further calls in book_prev() (line 775 of /data/www/icbo/modules/book/book.module).
  • Deprecated function: implode(): Passing glue string after array is deprecated. Swap the parameters in drupal_get_feeds() (line 394 of /data/www/icbo/includes/common.inc).

Day-4/Thursday program details

Details : Day-1/Mon | Day-2/Tue | Day-3/Wed | Day-4/Thrs | Day-5/Fri (satellite meeting)

Day-4 Program Details (View at a glance)

Thursday, August 4, 2016

8:00am-9:00am
Lobby
Breakfast
8:30am-10:30am
Check early start
Cascade Ballroom 110ABC
ICBO Plenary Session #6

Title: Semantics and interoperability

Chairs: John Gennari and Melissa Haendel

8:30am-8:50am IT601Identifying Missing Hierarchical Relations in SNOMED CT from Logical Definitions Based on the Lexical Features of Concept Names (Olivier Bodenreider)
8:50am-9:10am IT602: A Semantic Web Representation of Entire Populations (William Hogan for Daniel Welch)
9:10am-9:30am IT603Improving the Semantics of Drug Prescriptions with a Realist Ontology (Adrien Barton)
9:30am-9:50am IT604: Qualitative causal analyses of biosimulation models (Neal Maxwell)
9:50am-10:10am IT605SEPIO: A Semantic Model for the Integration and Analysis of Scientific Evidence (Matthew Brush) 
10:10am-10:30am IT606: Measuring the importance of annotation granularity to the detection of semantic similarity between phenotype profiles (Prashanti Manda)
10:30am-10:45am
Lobby
Coffee Break
10:45am-12:30pm
Cascade Ballroom 110ABC
ICBO Plenary Session #7

Title: Data annotation, standards and computational reasoning

Chairs: Chris Stoeckert and Mathias Brochhausen

10:45am-11:05am IT701: A Quality-Assurance Study of ChEBI (Michael Halper)
11:05am-11:25am IT702: To MIREOT or not to MIREOT? A case study of the impact of using MIREOT in the Experimental Factor Ontology (EFO)  (Luke Slater)
11:25am-11:38am IT703: Semantic Digitization of Experimental Data in Biological Sciences (Saurabh Raghuvanshi)
11:38am-11:51am IT704: Representation of parts within the Foundational Model of Anatomy ontology (Melissa Clarkson)
11:51am-12:04pm IT705: A Realist Representation of Social Identity Data (Amanda Hicks)
12:04pm-12:30pm Open discussion
12:30-12:45
Cascade Ballroom 110ABC
CLOSING
12:45pm-1:30pm
Lobby
Lunch (Also remove all Posters)
1:30pm-4:30pm
Cascade Ballroom 110ABC
ICBO Workshop W10 (more info)

An introduction to the Evidence and Conclusion Ontology and representing evidence in scientific research

Organizer: Marcus Chibucos

1:30pm-4:30pm
Elle Room 111A
ICBO Workshop W11 (more info)

Development of a Global Food Ontology (Farm to Fork)

Organizer: William Hsiao

1:30pm-1:40pm W11-01: Why we Need Food Ontology? (Damion Dooley)
1:40pm-1:50pm W11-02: International Efforts in Creating Food Vocabularies (Robert Hoehndorf and Matthew Lange)
1:50pm-2:00pm W11-03: Sustainable food systems and food in ecosystems (Pier Luigi Buttigieg)
2:00pm-2:10pm W11-04: Food composition: Understanding what gives food its colour, taste and aroma (Miguel Angel Rodriguez Garcia)
2:10pm-2:20pm W11-05: Food safety and infectious disease (William Hsiao)
2:20pm-2:30pm W11-06: FoodON Use cases: Caution! Food Allergies Ahead (Emma Griffiths)
2:30pm-2:40pm W11-07: IC3-Foods: An infrastructure for the next generation internet of food systems, food, and health. (Matthew Lange)
2:40pm-3:00pm W11-08: Use cases from participants (Audience)
3:00pm-4:00pm Discussion
1:30pm-4:30pm
Burlingham Room 111B

ICBO Workshop W12 (more info)

Tools and Applications for Data Standards and Knowledge Sharing in Plant Biodiversity

Organizers: Laurel Cooper, Dennis Stevenson, Chelsea Specht

1:40pm-2:00pm W12-01: Some Challenges in Working with Biodiversity Ontologies (Joel Sachs, Hong Cui and James Macklin: Remote presentation (Joel Sachs)
2:00pm-2:20pm W12-02: TraitBank: semantic integration of biodiversity data from diverse sources (Katja Schulz)
2:20pm-2:40pm W12-03: The Biological Collection Ontology links traditional and genomic biodiversity data for plants or any organism (Ramona Walls)
2:40pm-3:00pm W12-04: The Plant Phenology Ontology for Phenological Data Integration (Brian Stucky)
3:00pm-3:20pm Coffee Break
3:20pm-3:40pm D103-W12-05-IP36: The Phenoscape Knowledgebase: tools and APIs for computing across phenotypes from evolutionary diversity and model organisms (James Balhoff)
3:40pm-4:00pm W12-06:  Evolution of Floral Form: The potential of ontologies across diverse plant lineages (Chelsea Specht)
4:00pm-4:30pm Discussion

1:30pm-4:00pm
Trysting Tree Room 114AB

ICBO Workshop W13 (more info)

Semantic Metadata with ISO 11179 Metadata Registry Standard

Organizers: Denise Warzel and Robinette Renner

1:30pm-2:30pm Data management and data element metadata in 11179
  Lesson 1: Data Management
  Lesson 2: ISO/IEC 11179 Fundamentals
  Lesson 3: Forming Data Elements in 11179
  Recap
2:30pm-2:45pm Exercise
3:00pm-3:15pm Review/Issues/Coffee
3:15pm-3:30pm Using NCI tools to define semantics and syntax of Data Elements
  Lesson 4: Introduction to Curation Tool - Exercise
3:30pm-4:00pm Hands on Walk Through Exercise Group
  Creating and Classifying Collections of CDEs
  NCI Form Builder

1:30pm-4:30pm
Boardroom (upstairs)

ICBO Workshop W14 (more info)

Fourth International Workshop on Definitions in Ontologies (IWOOD 2016)

Organizers: Selja Seppälä and Daniel Schlegel

1:30pm-2:00pm W14-01: Uncovering Definition Coverage in the OBO Foundry Ontologies (Daniel Schlegel)
2:00pm-2:30pm W14-02: Systematizing Definitions in Ontologies (Selja Seppälä)
2:30pm-2:45pm Coffee Break
2:45pm-3:00pm Issues in definitions
3:00pm-3:30pm Exercises
3:30pm-4:00pm Discussion

3:00pm-3:30pm
Lobby

Coffee Break (workshop organizers to decide timing)

Evening

Activities on your own

  • Enjoy the City and outskirts
  • Visit places (consult locals or city guide and maps found in your conference bag)
  • Dinner (on your own)