Thursday, August 4, 2016
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8:00am-9:00am
Lobby |
Breakfast |
8:30am-10:30am
Check early start
Cascade Ballroom 110ABC |
ICBO Plenary Session #6
Title: Semantics and interoperability
Chairs: John Gennari and Melissa Haendel
| 8:30am-8:50am |
IT601: Identifying Missing Hierarchical Relations in SNOMED CT from Logical Definitions Based on the Lexical Features of Concept Names (Olivier Bodenreider) |
| 8:50am-9:10am |
IT602: A Semantic Web Representation of Entire Populations (William Hogan for Daniel Welch) |
| 9:10am-9:30am |
IT603: Improving the Semantics of Drug Prescriptions with a Realist Ontology (Adrien Barton) |
| 9:30am-9:50am |
IT604: Qualitative causal analyses of biosimulation models (Neal Maxwell) |
| 9:50am-10:10am |
IT605: SEPIO: A Semantic Model for the Integration and Analysis of Scientific Evidence (Matthew Brush) |
| 10:10am-10:30am |
IT606: Measuring the importance of annotation granularity to the detection of semantic similarity between phenotype profiles (Prashanti Manda) |
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10:30am-10:45am
Lobby |
Coffee Break |
10:45am-12:30pm
Cascade Ballroom 110ABC |
ICBO Plenary Session #7
Title: Data annotation, standards and computational reasoning
Chairs: Chris Stoeckert and Mathias Brochhausen
| 10:45am-11:05am |
IT701: A Quality-Assurance Study of ChEBI (Michael Halper) |
| 11:05am-11:25am |
IT702: To MIREOT or not to MIREOT? A case study of the impact of using MIREOT in the Experimental Factor Ontology (EFO) (Luke Slater) |
| 11:25am-11:38am |
IT703: Semantic Digitization of Experimental Data in Biological Sciences (Saurabh Raghuvanshi) |
| 11:38am-11:51am |
IT704: Representation of parts within the Foundational Model of Anatomy ontology (Melissa Clarkson) |
| 11:51am-12:04pm |
IT705: A Realist Representation of Social Identity Data (Amanda Hicks) |
| 12:04pm-12:30pm |
Open discussion |
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12:30-12:45
Cascade Ballroom 110ABC |
CLOSING |
12:45pm-1:30pm
Lobby |
Lunch (Also remove all Posters) |
1:30pm-4:30pm
Cascade Ballroom 110ABC |
ICBO Workshop W10 (more info)
An introduction to the Evidence and Conclusion Ontology and representing evidence in scientific research
Organizer: Marcus Chibucos
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1:30pm-4:30pm
Elle Room 111A |
ICBO Workshop W11 (more info)
Development of a Global Food Ontology (Farm to Fork)
Organizer: William Hsiao
| 1:30pm-1:40pm |
W11-01: Why we Need Food Ontology? (Damion Dooley) |
| 1:40pm-1:50pm |
W11-02: International Efforts in Creating Food Vocabularies (Robert Hoehndorf and Matthew Lange) |
| 1:50pm-2:00pm |
W11-03: Sustainable food systems and food in ecosystems (Pier Luigi Buttigieg) |
| 2:00pm-2:10pm |
W11-04: Food composition: Understanding what gives food its colour, taste and aroma (Miguel Angel Rodriguez Garcia) |
| 2:10pm-2:20pm |
W11-05: Food safety and infectious disease (William Hsiao) |
| 2:20pm-2:30pm |
W11-06: FoodON Use cases: Caution! Food Allergies Ahead (Emma Griffiths) |
| 2:30pm-2:40pm |
W11-07: IC3-Foods: An infrastructure for the next generation internet of food systems, food, and health. (Matthew Lange) |
| 2:40pm-3:00pm |
W11-08: Use cases from participants (Audience) |
| 3:00pm-4:00pm |
Discussion |
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1:30pm-4:30pm
Burlingham Room 111B |
ICBO Workshop W12 (more info)
Tools and Applications for Data Standards and Knowledge Sharing in Plant Biodiversity
Organizers: Laurel Cooper, Dennis Stevenson, Chelsea Specht
| 1:40pm-2:00pm |
W12-01: Some Challenges in Working with Biodiversity Ontologies (Joel Sachs, Hong Cui and James Macklin: Remote presentation (Joel Sachs) |
| 2:00pm-2:20pm |
W12-02: TraitBank: semantic integration of biodiversity data from diverse sources (Katja Schulz) |
| 2:20pm-2:40pm |
W12-03: The Biological Collection Ontology links traditional and genomic biodiversity data for plants or any organism (Ramona Walls) |
| 2:40pm-3:00pm |
W12-04: The Plant Phenology Ontology for Phenological Data Integration (Brian Stucky) |
| 3:00pm-3:20pm |
Coffee Break |
| 3:20pm-3:40pm |
D103-W12-05-IP36: The Phenoscape Knowledgebase: tools and APIs for computing across phenotypes from evolutionary diversity and model organisms (James Balhoff) |
| 3:40pm-4:00pm |
W12-06: Evolution of Floral Form: The potential of ontologies across diverse plant lineages (Chelsea Specht) |
| 4:00pm-4:30pm |
Discussion |
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1:30pm-4:00pm
Trysting Tree Room 114AB
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ICBO Workshop W13 (more info)
Semantic Metadata with ISO 11179 Metadata Registry Standard
Organizers: Denise Warzel and Robinette Renner
| 1:30pm-2:30pm |
Data management and data element metadata in 11179 |
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Lesson 1: Data Management |
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Lesson 2: ISO/IEC 11179 Fundamentals |
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Lesson 3: Forming Data Elements in 11179 |
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Recap |
| 2:30pm-2:45pm |
Exercise |
| 3:00pm-3:15pm |
Review/Issues/Coffee |
| 3:15pm-3:30pm |
Using NCI tools to define semantics and syntax of Data Elements |
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Lesson 4: Introduction to Curation Tool - Exercise |
| 3:30pm-4:00pm |
Hands on Walk Through Exercise Group |
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Creating and Classifying Collections of CDEs |
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NCI Form Builder |
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1:30pm-4:30pm
Boardroom (upstairs)
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ICBO Workshop W14 (more info)
Fourth International Workshop on Definitions in Ontologies (IWOOD 2016)
Organizers: Selja Seppälä and Daniel Schlegel
| 1:30pm-2:00pm |
W14-01: Uncovering Definition Coverage in the OBO Foundry Ontologies (Daniel Schlegel) |
| 2:00pm-2:30pm |
W14-02: Systematizing Definitions in Ontologies (Selja Seppälä) |
| 2:30pm-2:45pm |
Coffee Break |
| 2:45pm-3:00pm |
Issues in definitions |
| 3:00pm-3:30pm |
Exercises |
| 3:30pm-4:00pm |
Discussion |
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3:00pm-3:30pm
Lobby
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Coffee Break (workshop organizers to decide timing) |
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Evening
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Activities on your own
- Enjoy the City and outskirts
- Visit places (consult locals or city guide and maps found in your conference bag)
- Dinner (on your own)
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