Tuesday, August 2, 2016
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8:00am onwards
Lobby
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Conference registration opens
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8:00am-9:00am
Lobby
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Breakfast + Poster setup (Look for the Poster #)
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9:00am-9:15am
Room 110ABC
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Welcome
Dr. Pankaj Jaiswal, ICBO 2016 Conference Chair & Associate Prof. Oregon State University
Prof. Daniel (Dan) Arp, Dean, College of Agricultural Sciences, Oregon State University
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9:15am-10:15am
Room 110ABC
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Keynote Address
Chairs: Pankaj jaiswal and Pier Luigi Buttigieg
Challenges In Mapping the Nation's Climate and Weather: Every day, Everywhere
Prof. Christopher (Chris) Daly, Oregon State University
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10:15am-10:30am
Lobby
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Coffee Break + Poster setup (Look for the Poster #)
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10:30am-12:30pm
Room 110ABC
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Joint ICBO and BioCreative Plenary Session #1 (Special Topic)
Natural Language Processing & Data Mining with Ontologies
Chairs: Cecilia Arighi and Pankaj Jaiswal
| 10:30am-11:00am |
BIT101: Large-scale Semantic Indexing with Biomedical Ontologies (Donald Comeau, NCBI, National Institutes of Health, USA) |
| 11:00am-11:15am |
BIT102: One tagger, many uses: Illustrating the power of ontologies in dictionary-based named entity recognition (Lars Juhl Jensen, NNF Center for Protein Research, Denmark) |
| 11:15am-11:45am |
BIT103: Scalable Text Mining Assisted Curation of PTM Proteoforms in the Protein Ontology (Karen Ross, Georgetown University, USA) |
| 11:45am-12:00pm |
BIT104: Cardiovascular Health and Physical Activity: A Model for Health Promotion and Decision Support Ontologies (Vimala Ponna, UC Davis, USA) |
| 12:00pm-12:15pm |
BIT105: A Web Application for Extracting Key Domain Information for Scientific Publications using Ontology (Weijia Xu, Texas Advanced Computing Center, University of Texas at Austin, USA) |
| 12:15pm-12:30pm |
BIT106: Use of text mining for Experimental Factor Ontology coverage expansion in the scope of target validation (Senay Kafkas, Wellcome Trust Genome Campus, UK) |
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12:30pm-1:30pm
Lobby
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Lunch + Posters (Look for the Poster #)
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1:30pm-3:30pm
Room 110ABC
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ICBO Plenary session #2 (Special Topic)
SDGIO: Sustainable Development Goals Interface Ontology--Semantics for Sustainability
Chairs: Mark Jensen, Barry Smith and Pier Buttigieg
| 1:30pm-1:50pm |
IT201: Environmental semantics for sustainable development in an interconnected biosphere (Pier Buttigieg) |
| 1:50pm-2:10pm |
IT202: Sustainable development of the Sustainable Development Goals Interface Ontology (Mark Jensen) |
| 2:10pm-2:30pm |
IT203: Defining and sustaining populations and communities (Ramona Walls) |
| 2:30pm-2:50pm |
IT204: A sustainable approach to knowledge representation in the domain of sustainability: bridging SKOS and OWL (Chris Mungall) |
| 2:50pm-3:10pm |
IT205: Data-driven Agricultural Research for Development: A Need for Data Harmonization Via Semantics (Medha Devare) |
| 3:10pm-3:30pm |
IT206: Closing comments: The UNEP Ontologies and the OBO Foundry (Barry Smith) |
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3:30pm-4:00pm
Lobby
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Coffee Break + Poster setup (Look for the Poster #)
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4:00pm-6:00pm
Room 110ABC
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ICBO Plenary session #3
- Invited Talks (4-5pm)
Chair: Pankaj Jaiswal
| 4:00pm-4:30pm |
Microbiomes, metagenomes, and informatic techniques to characterize the uncultured biosphere (Thomas Sharpton, Oregon State University) |
| 4:30pm-5:00pm |
Pattern and process in the emergence and elimination of infectious diseases: challenges and opportunities for big data (Benjamin Dalziel, Oregon State University) |
- Flash Talks (5-6pm) (Look for the order and Poster #)
Chairs: Laurel Cooper and Sivaram Arabandi
- By all Poster presenters (1.5 min each poster | two slides only: One title and one content slide)
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6:00pm
Room 110ABC
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Posters and Demo Session #2
- POSTERS: All ICBO Posters + BioCreative (if any)
- DEMO
- D201: Ontobull and BFOConvert: Web-based programs to support automatic ontology conversion (Edison Ong, Zuoshuang Xiang, Jie Zheng, Barry Smith, Yongqun He)
- D202: Reusing the NCBO BioPortal technology for agronomy to build AgroPortal (Clement Jonquet)
- D203: Humane OWL: RDF and OWL for Humans (James Overton)
- BIT101-D204: Large-scale Semantic Indexing with Biomedical Ontologies (Chih-Hsuan Wei, Robert Leaman, Zhiyong Lu)
- D205: Easy Extraction of Terms and Definitions with OWL2TL (John Judkins, Joseph Utecht, Mathias Brochhausen)
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6:00pm
Lobby/ Room 110ABC
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Evening Mixer
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